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BMCBI
2007
119views more  BMCBI 2007»
13 years 8 months ago
Efficacy of different protein descriptors in predicting protein functional families
Background: Sequence-derived structural and physicochemical descriptors have frequently been used in machine learning prediction of protein functional families, thus there is a ne...
Serene A. K. Ong, Hong Huang Lin, Yu Zong Chen, Ze...
JCC
2008
92views more  JCC 2008»
13 years 8 months ago
Fast procedure for reconstruction of full-atom protein models from reduced representations
: We introduce PULCHRA, a fast and robust method for the reconstruction of full-atom protein models starting from a reduced protein representation. The algorithm is particularly su...
Piotr Rotkiewicz, Jeffrey Skolnick
BMCBI
2006
120views more  BMCBI 2006»
13 years 8 months ago
Classification of protein quaternary structure by functional domain composition
Background: The number and the arrangement of subunits that form a protein are referred to as quaternary structure. Quaternary structure is an important protein attribute that is ...
Xiaojing Yu, Chuan Wang, Yixue Li
CANDC
2006
ACM
13 years 8 months ago
An RNA folding algorithm including pseudoknots based on dynamic weighted matching
On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structur...
Haijun Liu, Dong Xu, Jianlin Shao, Yifei Wang
BMCBI
2005
149views more  BMCBI 2005»
13 years 7 months ago
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
Jan Kosinski, Marcin Feder, Janusz M. Bujnicki