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BMCBI
2007
134views more  BMCBI 2007»
13 years 10 months ago
Benchmarking natural-language parsers for biological applications using dependency graphs
Background: Interest is growing in the application of syntactic parsers to natural language processing problems in biology, but assessing their performance is difficult because di...
Andrew B. Clegg, Adrian J. Shepherd
BIBE
2007
IEEE
169views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
Combining Semantics, Context, and Statistical Evidence in Genomics Literature Search
—We present an information retrieval model for combining evidence from concept-based semantics, term statistics, and context for improving search precision of genomics literature...
Jay Urbain, Nazli Goharian, Ophir Frieder
BIOINFORMATICS
2012
12 years 5 days ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...
SIGMOD
2011
ACM
455views Database» more  SIGMOD 2011»
13 years 18 days ago
DBWiki: a structured wiki for curated data and collaborative data management
Wikis have proved enormously successful as a means to collaborate in the creation and publication of textual information. At the same time, a large number of curated databases hav...
Peter Buneman, James Cheney, Sam Lindley, Heiko M&...
BMCBI
2006
130views more  BMCBI 2006»
13 years 9 months ago
Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping
Background: With the advances in DNA sequencer-based technologies, it has become possible to automate several steps of the genotyping process leading to increased throughput. To e...
B. Jayashree, Praveen T. Reddy, Y. Leeladevi, Jona...