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BMCBI
2007
108views more  BMCBI 2007»
15 years 4 months ago
Integrating sequence and structural biology with DAS
Background: The Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequenc...
Andreas Prlic, Thomas A. Down, Eugene Kulesha, Rob...
ATAL
2003
Springer
15 years 9 months ago
A Catalog of Biologically-Inspired Primitives for Engineering Self-Organization
Abstract. The Amorphous Computing project is aimed at developing programming methodologies for systems composed of vast numbers of locallyinteracting, identically-programmed agents...
Radhika Nagpal
ENTCS
2008
122views more  ENTCS 2008»
15 years 4 months ago
Concurrency in Biological Modeling: Behavior, Execution and Visualization
Modeling natural systems is a complicated task that involves the concurrent behavior of various processes, mechanisms and objects. Here, we describe an approach that we have been ...
David Harel, Yaki Setty, Sol Efroni, Naamah Swerdl...
IRI
2008
IEEE
15 years 11 months ago
Biological question answering with syntactic and semantic feature matching and an improved mean reciprocal ranking measurement
Specific information on biomolecular events such as protein-protein and gene-protein interactions is essential for molecular biology researchers. However, the results derived by c...
Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai...
BMCBI
2006
145views more  BMCBI 2006»
15 years 4 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...