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BMCBI
2002
110views more  BMCBI 2002»
15 years 4 months ago
Identifying functional relationships among human genes by systematic analysis of biological literature
Background: The availability of biomedical literature in electronic format has made it possible to implement automatic text processing methods to expose implicit relationships amo...
Yong-Chuan Tao, Rudolph L. Leibel
BMCBI
2007
134views more  BMCBI 2007»
15 years 4 months ago
Benchmarking natural-language parsers for biological applications using dependency graphs
Background: Interest is growing in the application of syntactic parsers to natural language processing problems in biology, but assessing their performance is difficult because di...
Andrew B. Clegg, Adrian J. Shepherd
BMCBI
2007
145views more  BMCBI 2007»
15 years 4 months ago
BioPP: a tool for web-publication of biological networks
Background: Cellular processes depend on the function of intracellular molecular networks. The curation of the literature relevant to specific biological pathways is important for...
Ganesh A. Viswanathan, German Nudelman, Sonali Pat...
CSMR
2007
IEEE
15 years 11 months ago
Consistently Incorporating Changes to Evolve Transition-based Systems
Evolving software-intensive systems from one consistent state to another is a challenging activity due to the intricate inter-dependencies among the components. In this paper, we ...
Mahadevan Subramaniam, Harvey P. Siy
ALMOB
2006
110views more  ALMOB 2006»
15 years 4 months ago
Computing distribution of scale independent motifs in biological sequences
The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
Jonas S. Almeida, Susana Vinga