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» Case Study: Visualization of annotated DNA sequences
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BMCBI
2010
135views more  BMCBI 2010»
13 years 8 months ago
Integration and visualization of systems biology data in context of the genome
Background: High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization a...
J. Christopher Bare, Tie Koide, David J. Reiss, Da...
VIZSEC
2007
Springer
14 years 2 months ago
Visual Analysis of Network Flow Data with Timelines and Event Plots
This paper describes Isis, a system that uses progressive multiples of timelines and event plots to support the iterative investigation of intrusions by experienced analysts using ...
Doantam Phan, J. Gerth, M. Lee, Andreas Paepcke, T...
NAR
2006
120views more  NAR 2006»
13 years 8 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...
ICDE
2009
IEEE
173views Database» more  ICDE 2009»
13 years 6 months ago
Efficient Mining of Closed Repetitive Gapped Subsequences from a Sequence Database
There is a huge wealth of sequence data available, for example, customer purchase histories, program execution traces, DNA, and protein sequences. Analyzing this wealth of data to ...
Bolin Ding, David Lo, Jiawei Han, Siau-Cheng Khoo
BMCBI
2008
125views more  BMCBI 2008»
13 years 8 months ago
SNPLims: a data management system for genome wide association studies
Background: Recent progresses in genotyping technologies allow the generation high-density genetic maps using hundreds of thousands of genetic markers for each DNA sample. The ava...
Alessandro Orro, Guia Guffanti, Erika Salvi, Fabio...