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» Combinatorial Detection of Arrhythmia
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BMCBI
2010
121views more  BMCBI 2010»
13 years 10 months ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
BMCBI
2008
105views more  BMCBI 2008»
13 years 10 months ago
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Background: High throughput microarray technologies have afforded the investigation of genomes, epigenomes, and transcriptomes at unprecedented resolution. However, software packa...
Raj Chari, Bradley P. Coe, Craig Wedseltoft, Marie...
ISBI
2008
IEEE
14 years 10 months ago
Chromosome pairing for karyotyping purposes using mutual information
Cytogenetics is the preferred tool in the diagnosis of genetic diseases such as leukemia and detection of aquired chromosomal abnormalities, such as translocations, deletions, mon...
Artem Khmelinskii, João Sanches, Rodrigo Ve...
RECOMB
2006
Springer
14 years 10 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
ICCAD
2003
IEEE
170views Hardware» more  ICCAD 2003»
14 years 6 months ago
Evaluation of Placement Techniques for DNA Probe Array Layout
DNA probe arrays have emerged as a core genomic technology that enables cost-effective gene expression monitoring, mutation detection, single nucleotide polymorphism analysis and ...
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu ...