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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 11 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    Download  www.biomedcentral.com
    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    BIOCOMP
    2008
    146views Bioinformatics» more  BIOCOMP 2008»
    Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
    13 years 9 months ago
    Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
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    Background: Inferring a gene regulatory network (GRN) from high throughput biological data is often an under-determined problem and is a challenging task due to the following reas...
    Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
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    CSB
    2005
    IEEE
    189views Bioinformatics» more  CSB 2005»
    Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks
    14 years 1 months ago
    Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks
    Download  conferences.computer.org
    We developed a machine learning system for determining gene functions from heterogeneous sources of data sets using a Weighted Naive Bayesian Network (WNB). The knowledge of gene ...
    Xutao Deng, Huimin Geng, Hesham H. Ali
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    BMCBI
    2007
    169views more  BMCBI 2007»
    Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and i
    13 years 8 months ago
    Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and i
    Download  www.biomedcentral.com
    Background: Gene expression microarray and other multiplex data hold promise for addressing the challenges of cellular complexity, refined diagnoses and the discovery of well-targ...
    Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Orto...
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    BMCBI
    2007
    134views more  BMCBI 2007»
    Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    13 years 8 months ago
    Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    Download  www.biomedcentral.com
    Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
    Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
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