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APBC
2004
108views Bioinformatics» more  APBC 2004»
13 years 9 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
SEMWEB
2007
Springer
14 years 2 months ago
X-SOM Results for OAEI 2007
This paper summarizes the results of the X-SOM tool in the OAEI 2007 campaign. X-SOM is an extensible ontology mapper that combines various matching algorithms by means of a feed-f...
Carlo Curino, Giorgio Orsi, Letizia Tanca
CP
2008
Springer
13 years 9 months ago
Model Restarts for Structural Symmetry Breaking
ctural abstractions that were introduced in [17]. Compared with other symmetry-breaking techniques, the big advantage of dynamic symmetry breaking is that it can accommodate dynami...
Daniel S. Heller, Aurojit Panda, Meinolf Sellmann,...
BMCBI
2006
87views more  BMCBI 2006»
13 years 8 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
BMCBI
2007
142views more  BMCBI 2007»
13 years 8 months ago
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary informa
Background: In past number of methods have been developed for predicting subcellular location of eukaryotic, prokaryotic (Gram-negative and Gram-positive bacteria) and human prote...
Mamoon Rashid, Sudipto Saha, Gajendra P. S. Raghav...