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» Comparative modeling without implicit sequence alignments
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BMCBI
2004
158views more  BMCBI 2004»
13 years 8 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
BMCBI
2007
134views more  BMCBI 2007»
13 years 8 months ago
PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results
Background: BLAST searches are widely used for sequence alignment. The search results are commonly adopted for various functional and comparative genomics tasks such as annotating...
Ji He, Xinbin Dai, Xuechun Zhao
HT
2009
ACM
14 years 3 months ago
Comparing spatial hypertext collections
This paper proposes an approach to comparison of spatial hypertext collections which avoids becoming entangled in complexities of version management and merging. We also propose a...
J. Nathan Matias, David P. Williams
ISAAC
2004
Springer
114views Algorithms» more  ISAAC 2004»
14 years 1 months ago
Structural Alignment of Two RNA Sequences with Lagrangian Relaxation
RNA is generally a single-stranded molecule where the bases form hydrogen bonds within the same molecule leading to structure formation. In comparing different homologous RNA mole...
Markus Bauer, Gunnar W. Klau
NAACL
2003
13 years 10 months ago
Implicit Trajectory Modeling through Gaussian Transition Models for Speech Recognition
It is well known that frame independence assumption is a fundamental limitation of current HMM based speech recognition systems. By treating each speech frame independently, HMMs ...
Hua Yu, Tanja Schultz