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BMCBI
2007
136views more  BMCBI 2007»
13 years 8 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 8 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
IWANN
2009
Springer
14 years 2 months ago
ZARAMIT: A System for the Evolutionary Study of Human Mitochondrial DNA
Abstract. ZARAMIT is an information system capable of fully automated phylogeny reconstruction. Methods have been tailored to mitochondrial DNA sequences, with focus on subproblem ...
Roberto Blanco, Elvira Mayordomo
ICDM
2007
IEEE
227views Data Mining» more  ICDM 2007»
14 years 2 months ago
Optimal Subsequence Bijection
We consider the problem of elastic matching of sequences of real numbers. Since both a query and a target sequence may be noisy, i.e., contain some outlier elements, it is desirab...
Longin Jan Latecki, Qiang Wang, Suzan Koknar-Tezel...
CCECE
2006
IEEE
14 years 2 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...