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BMCBI
2005
132views more  BMCBI 2005»
13 years 8 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
VLSID
2004
IEEE
107views VLSI» more  VLSID 2004»
14 years 9 months ago
Performance Analysis of Inter Cluster Communication Methods in VLIW Architecture
With increasing demands for high performance by embedded systems, especially by digital signal processing applications, embedded processors must increase available instruction lev...
Sourabh Saluja, Anshul Kumar
RECOMB
2004
Springer
14 years 9 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
ACSC
2004
IEEE
14 years 19 days ago
Homeless and Home-based Lazy Release Consistency Protocols on Distributed Shared Memory
This paper describes the comparison between homeless and home-based Lazy Release Consistency (LRC) protocols which are used to implement Distributed Shared Memory (DSM) in cluster...
Byung-Hyun Yu, Zhiyi Huang, Stephen Cranefield, Ma...
ICPP
2003
IEEE
14 years 2 months ago
Performance of a Heterogeneous Grid Partitioner for N-body Applications
An important characteristic of distributed grids is that they allow geographically separated multicomputers to be tied together in a transparent virtual environment to solve large...
Daniel J. Harvey, Sajal K. Das, Rupak Biswas