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» Computability of Models for Sequence Assembly
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HPDC
2010
IEEE
13 years 9 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
CBMS
2007
IEEE
14 years 3 months ago
Segmentation and Tracking of the Left Ventricle in 3D MRI Sequences Using an Active Surface Model
We describe a 3D+T active surface model for segmentation and tracking of the left ventricular endocardium within 3D MRI sequences of the cardiac cycle. In order to perform segment...
Julien Mille, Romuald Boné, Pascal Makris, ...
IJBRA
2006
111views more  IJBRA 2006»
13 years 8 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
BMCBI
2011
13 years 8 days ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
BMCBI
2007
139views more  BMCBI 2007»
13 years 8 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper