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» Computation in Gene Networks
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ICS
2005
Tsinghua U.
14 years 3 months ago
Optimization of MPI collective communication on BlueGene/L systems
BlueGene/L is currently the world’s fastest supercomputer. It consists of a large number of low power dual-processor compute nodes interconnected by high speed torus and collect...
George Almási, Philip Heidelberger, Charles...
CEC
2008
IEEE
13 years 10 months ago
Regulation of gene regulation - smooth binding with dynamic affinity affects evolvability
Abstract-- Understanding the evolvability of simple differentiating multicellular systems is a fundamental problem in the biology of genetic regulatory networks and in computationa...
Johannes F. Knabe, Chrystopher L. Nehaniv, Maria J...
SAC
2004
ACM
14 years 3 months ago
Time-frequency feature detection for time-course microarray data
Gene clustering based on microarray data provides useful functional information to the working biologists. Many current gene-clustering algorithms rely on Euclidean-based distance...
Jiawu Feng, Paolo Emilio Barbano, Bud Mishra
RECOMB
2007
Springer
14 years 3 months ago
Network Legos: Building Blocks of Cellular Wiring Diagrams
Publicly-available data sets provide detailed and large-scale information on multiple types of molecular interaction networks in a number of model organisms. These multi-modal univ...
T. M. Murali, Corban G. Rivera
BIBE
2007
IEEE
124views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm
—High-throughput data such as microarrays make it possible to investigate the molecular-level mechanism of cancer more efficiently. Computational methods boost the microarray ana...
Chan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Ch...