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CIBCB
2007
IEEE
15 years 11 months ago
Overestimation for Multiple Sequence Alignment
Abstract— Multiple sequence alignment is an important problem in computational biology. A-star is an algorithm that can be used to find exact alignments. We present a simple mod...
Tristan Cazenave
RECOMB
2007
Springer
15 years 10 months ago
Parts of the Problem of Polyploids in Rearrangement Phylogeny
Abstract. Genome doubling simultaneously doubles all genetic markers. Genome rearrangement phylogenetics requires that all genomes analyzed have the same set of orthologs, so that ...
Chunfang Zheng, Qian Zhu, David Sankoff
RECOMB
1997
Springer
15 years 8 months ago
Progressive multiple alignment with constraints
A progressive alignment algorithm produces a multi-alignment of a set of sequences by repeatedly aligning pairs of sequences and/or previously generated alignments. We describe a ...
Gene Myers, Sanford Selznick, Zheng Zhang 0004, We...
RECOMB
2000
Springer
15 years 8 months ago
A compression algorithm for DNA sequences and its applications in genome comparison
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
Xin Chen, Sam Kwong, Ming Li
RECOMB
2000
Springer
15 years 8 months ago
Universal DNA tag systems: a combinatorial design scheme
Custom-designed DNA arrays offer the possibility of simultaneously monitoring thousands of hybridization reactions. These arrays show great potential for many medical and scientif...
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, ...