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RECOMB
2006
Springer
14 years 8 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
GECCO
2009
Springer
138views Optimization» more  GECCO 2009»
14 years 3 months ago
IMAD: in-execution malware analysis and detection
The sophistication of computer malware is becoming a serious threat to the information technology infrastructure, which is the backbone of modern e-commerce systems. We, therefore...
Syed Bilal Mehdi, Ajay Kumar Tanwani, Muddassar Fa...
GECCO
2009
Springer
146views Optimization» more  GECCO 2009»
14 years 3 months ago
Using a distance metric to guide PSO algorithms for many-objective optimization
In this paper we propose to use a distance metric based on user-preferences to efficiently find solutions for manyobjective problems. We use a particle swarm optimization (PSO) a...
Upali K. Wickramasinghe, Xiaodong Li
CIBCB
2007
IEEE
14 years 2 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 2 months ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom