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BMCBI
2011
13 years 3 months ago
PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data
Background: OmniLog™ phenotype microarrays (PMs) have the capability to measure and compare the growth responses of biological samples upon exposure to hundreds of growth condit...
Wenling E. Chang, Keri Sarver, Brandon W. Higgs, T...
GECCO
2009
Springer
14 years 3 months ago
On the performance effects of unbiased module encapsulation
A recent theoretical investigation of modular representations shows that certain modularizations can introduce a distance bias into a landscape. This was a static analysis, and em...
R. Paul Wiegand, Gautham Anil, Ivan I. Garibay, Oz...
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 2 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
SIGMOD
2008
ACM
157views Database» more  SIGMOD 2008»
14 years 9 months ago
CRD: fast co-clustering on large datasets utilizing sampling-based matrix decomposition
The problem of simultaneously clustering columns and rows (coclustering) arises in important applications, such as text data mining, microarray analysis, and recommendation system...
Feng Pan, Xiang Zhang, Wei Wang 0010
ISQED
2007
IEEE
141views Hardware» more  ISQED 2007»
14 years 3 months ago
OPC-Friendly Bus Driven Floorplanning
In this paper, we address the interconnect-driven floorplanning problem that integrates OPC-friendly bus assignment with floorplanning. Buses consist of a number of horizontal/v...
Hua Xiang, Liang Deng, Li-Da Huang, Martin D. F. W...