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BMCBI
2007
124views more  BMCBI 2007»
13 years 10 months ago
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
Background: Clustered Regularly Interspaced Palindromic Repeats (CRISPRs) are a novel type of direct repeat found in a wide range of bacteria and archaea. CRISPRs are beginning to...
Charles Bland, Teresa L. Ramsey, Fareedah Sabree, ...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 8 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
CLUSTER
2009
IEEE
13 years 8 months ago
Design alternatives for implementing fence synchronization in MPI-2 one-sided communication for InfiniBand clusters
Scientific computing has seen an immense growth in recent years. The Message Passing Interface (MPI) has become the de-facto standard for parallel programming model for distribute...
Gopalakrishnan Santhanaraman, Tejus Gangadharappa,...
ISCA
2007
IEEE
198views Hardware» more  ISCA 2007»
14 years 5 months ago
Making the fast case common and the uncommon case simple in unbounded transactional memory
Hardware transactional memory has great potential to simplify the creation of correct and efficient multithreaded programs, allowing programmers to exploit more effectively the s...
Colin Blundell, Joe Devietti, E. Christopher Lewis...
PLDI
2010
ACM
14 years 3 months ago
Line-up: a complete and automatic linearizability checker
Modular development of concurrent applications requires threadsafe components that behave correctly when called concurrently by multiple client threads. This paper focuses on line...
Sebastian Burckhardt, Chris Dern, Madanlal Musuvat...