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IPPS
2007
IEEE
14 years 1 months ago
Formal Analysis for Debugging and Performance Optimization of MPI
High-end computing is universally recognized to be a strategic tool for leadership in science and technology. A significant portion of high-end computing is conducted on clusters...
Ganesh Gopalakrishnan, Robert M. Kirby
NAR
2006
62views more  NAR 2006»
13 years 7 months ago
siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
siVirus (http://siVirus.RNAi.jp/) is a web-based online software system that provides efficient short interfering RNA (siRNA) design for antiviral RNA interference (RNAi). siVirus...
Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka ...
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
TSMC
1998
82views more  TSMC 1998»
13 years 7 months ago
To push or not to push: on the rearrangement of movable objects by a mobile robot
—We formulate and address the problem of planning a pushing manipulation by a mobile robot which tries to rearrange several movable objects in its work space. We present an algor...
Ohad Ben-Shahar, Ehud Rivlin
BMCBI
2006
179views more  BMCBI 2006»
13 years 7 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...