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» Constraint Based Methods for Biological Sequence Analysis
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BMCBI
2006
94views more  BMCBI 2006»
15 years 4 months ago
Simulation of microarray data with realistic characteristics
Background: Microarray technologies have become common tools in biological research. As a result, a need for effective computational methods for data analysis has emerged. Numerou...
Matti Nykter, Tommi Aho, Miika Ahdesmäki, Pek...
BMCBI
2007
153views more  BMCBI 2007»
15 years 4 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
BMCBI
2002
133views more  BMCBI 2002»
15 years 3 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
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JACM
2002
94views more  JACM 2002»
15 years 3 months ago
The greedy path-merging algorithm for contig scaffolding
Given a collection of contigs and mate-pairs. The Contig Scaffolding Problem is to order and orientate the given contigs in a manner that is consistent with as many mate-pairs as p...
Daniel H. Huson, Knut Reinert, Eugene W. Myers
TSP
2008
109views more  TSP 2008»
15 years 3 months ago
Code Design to Optimize Radar Detection Performance Under Accuracy and Similarity Constraints
This paper deals with the design of coded waveforms which optimize radar performances in the presence of colored Gaussian disturbance. We focus on the class of linearly coded puls...
Antonio De Maio, Silvio De Nicola, Yongwei Huang, ...