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» Context Dependent Analysis of BioAmbients
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BMCBI
2007
181views more  BMCBI 2007»
13 years 7 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller
BMCBI
2004
146views more  BMCBI 2004»
13 years 7 months ago
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
Background: Functional genomics studies are yielding information about regulatory processes in the cell at an unprecedented scale. In the yeast S. cerevisiae, DNA microarrays have...
Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
BMCBI
2004
177views more  BMCBI 2004»
13 years 7 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
JCDL
2009
ACM
133views Education» more  JCDL 2009»
14 years 2 months ago
EnTag: enhancing social tagging for discovery
The EnTag (Enhanced Tagging for Discovery) project investigated the effect on indexing and retrieval when using only social tagging versus when using social tagging in combination...
Koraljka Golub, Jim Moon, Douglas Tudhope, Catheri...
ER
2004
Springer
169views Database» more  ER 2004»
14 years 1 months ago
Intentional Modeling to Support Identity Management
Identity management has arisen as a major and urgent challenge for internet-based communications and information services. Internet services involve complex networks of relationshi...
Lin Liu, Eric S. K. Yu