309 search results - page 8 / 62 » Contextual alignment of biological sequences |
CIBCB
2007
IEEE
14 years 2 months ago
2007
IEEE
Abstract— Multiple sequence alignment is an important problem in computational biology. A-star is an algorithm that can be used to find exact alignments. We present a simple mod...
BMCBI
2005
13 years 7 months ago
2005
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
RECOMB
2006
Springer
14 years 8 months ago
2006
Springer
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
AINA
2008
IEEE
14 years 2 months ago
2008
IEEE
The common-use gap penalty strategies, constant penalty and affine gap penalty, have been adopted in the traditional three-sequence alignment algorithm which considers the inserti...
RECOMB
2004
Springer
14 years 8 months ago
2004
Springer
We have developed a multiple genome alignment algorithm by using a sequence clustering algorithm to combine local pairwise genome sequence matches produced by pairwise genome align...