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RECOMB
2006
Springer
16 years 3 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
RECOMB
2005
Springer
16 years 3 months ago
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Abstract. Current approaches for identification and detection of transcription factor binding sites rely on an extensive set of known target genes. Here we describe a novel structu...
Tommy Kaplan, Nir Friedman, Hanah Margalit
126
Voted
SIGMOD
2004
ACM
109views Database» more  SIGMOD 2004»
16 years 3 months ago
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K....
120
Voted
MICCAI
2009
Springer
16 years 24 days ago
A Two-Level Approach Towards Semantic Colon Segmentation: Removing Extra-Colonic Findings
Abstract. Computer aided detection (CAD) of colonic polyps in computed tomographic colonography has tremendously impacted colorectal cancer diagnosis using 3D medical imaging. It i...
Le Lu, Matthias Wolf, Jianming Liang, Murat Dundar...
ICCAD
2008
IEEE
98views Hardware» more  ICCAD 2008»
16 years 13 days ago
Scalable and scalably-verifiable sequential synthesis
This paper describes an efficient implementation of an effective sequential synthesis operation that uses induction to detect and merge sequentially-equivalent nodes. State-encodi...
Alan Mishchenko, Michael L. Case, Robert K. Brayto...