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» Counting Coalescent Histories
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JCB
2007
104views more  JCB 2007»
13 years 11 months ago
Counting Coalescent Histories
Given a species tree and a gene tree, a valid coalescent history is a list of the branches of the species tree on which coalescences in the gene tree take place. I develop a recur...
Noah A. Rosenberg
IJDMB
2010
61views more  IJDMB 2010»
13 years 9 months ago
On a novel coalescent model for genome-wide evolution of Copy Number Variations
: Since we are limited in our knowledge of human demographic history and variations of recombination and mutation rates, large-scale computer simulation is a necessary tool in gene...
Antonina Mitrofanova, Bhubaneswar (Bud) Mishra
RECOMB
2008
Springer
14 years 11 months ago
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony
Understanding the variation of recombination rates across a given genome is crucial for disease gene mapping and for detecting signatures of selection, to name just a couple of app...
Jotun Hein, Rune B. Lyngsø, Yun S. Song
BMCBI
2005
163views more  BMCBI 2005»
13 years 11 months ago
CoaSim: A flexible environment for simulating genetic data under coalescent models
Background: Coalescent simulations are playing a large role in interpreting large scale intraspecific sequence or polymorphism surveys and for planning and evaluating association ...
Thomas Mailund, Mikkel H. Schierup, Christian N. S...
BMCBI
2007
172views more  BMCBI 2007»
13 years 11 months ago
msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
Background: Although testing for simultaneous divergence (vicariance) across different population-pairs that span the same barrier to gene flow is of central importance to evoluti...
Michael J. Hickerson, Eli Stahl, Naoki Takebayashi