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» DNA Computing Based on Splicing: Universality Results
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JUCS
2006
68views more  JUCS 2006»
13 years 7 months ago
Time-varying H Systems Revisited
: We cast a new look on time-varying distributed H systems. In their original definition, where only new strings are passed to the next component, this language definition in itsel...
Remco Loos
BMCBI
2008
143views more  BMCBI 2008»
13 years 7 months ago
Automatic detection of exonic splicing enhancers (ESEs) using SVMs
Background: Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for S...
Britta Mersch, Alexander Gepperth, Sándor S...
RECOMB
2007
Springer
14 years 8 months ago
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
Our group has recently developed a compact, universal protein binding microarray (PBM) that can be used to determine the binding preferences of transcription factors (TFs) [1]. Thi...
Anthony A. Philippakis, Aaron M. Qureshi, Michael ...
TCS
2008
13 years 7 months ago
On the weight of universal insertion grammars
We study the computational power of pure insertion grammars. We show that pure insertion grammars of weight 3 can characterize all recursively enumerable languages. This is achiev...
Lila Kari, Petr Sosík
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
13 years 11 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....