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BMCBI
2007
129views more  BMCBI 2007»
13 years 8 months ago
Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping
Background: The Sulston score is a well-established, though approximate metric for probabilistically evaluating postulated clone overlaps in DNA fingerprint mapping. It is known t...
Michael C. Wendl
CEC
2005
IEEE
13 years 10 months ago
DNA implementation of k-shortest paths computation
In this paper, a demonstration of DNA computing for k-shortest paths of a weighted graph is realized by biochemical experiments in such a way that every path is encoded by oligonuc...
Zuwairie Ibrahim, Yusei Tsuboi, Mohd Saufee Muhamm...
BMCBI
2010
167views more  BMCBI 2010»
13 years 8 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
ICNC
2005
Springer
14 years 1 months ago
DNA Computing Approach to Construction of Semantic Model
In this paper, after a new DNA-based semantic model is theoretically proposed, the preliminary experiment on construction of the small test model is successfully done. This model, ...
Yusei Tsuboi, Zuwairie Ibrahim, Nobuyuki Kasai, Os...
MCU
1998
119views Hardware» more  MCU 1998»
13 years 9 months ago
DNA Computing Based on Splicing: Universality Results
The paper extends some of the most recently obtained results on the computational universality of speci c variants of H systems (e.g. with regular sets of rules) and proves that we...
Gheorghe Paun