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JCIT
2008
108views more  JCIT 2008»
13 years 10 months ago
Data Mining for Genetics: A Genetic Algorithm Approach
MINING biological data is an emerging area of intersection between data mining and bioinformatics. Bio-informaticians have been working on the research and development of computat...
G. Madhu, Keshava Reddy
CORR
2007
Springer
81views Education» more  CORR 2007»
13 years 10 months ago
Faster exon assembly by sparse spliced alignment
Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is spliced alignment, proposed by Gelf...
Alexandre Tiskin
WABI
2010
Springer
124views Bioinformatics» more  WABI 2010»
13 years 8 months ago
Improved Orientations of Physical Networks
Abstract. The orientation of physical networks is a prime task in deciphering the signaling-regulatory circuitry of the cell. One manifestation of this computational task is as a m...
Iftah Gamzu, Danny Segev, Roded Sharan
BMCBI
2010
153views more  BMCBI 2010»
13 years 10 months ago
GOAL: A software tool for assessing biological significance of genes groups
Background: Modern high throughput experimental techniques such as DNA microarrays often result in large lists of genes. Computational biology tools such as clustering are then us...
Alain B. Tchagang, Alexander Gawronski, Hugo B&eac...
BMCBI
2007
233views more  BMCBI 2007»
13 years 10 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong