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RECOMB
2007
Springer
16 years 4 months ago
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
Hetunandan Kamisetty, Eric P. Xing, Christopher Ja...
FOCS
2009
IEEE
15 years 10 months ago
The Complexity of Rationalizing Network Formation
— We study the complexity of rationalizing network formation. In this problem we fix an underlying model describing how selfish parties (the vertices) produce a graph by making...
Shankar Kalyanaraman, Christopher Umans
BMCBI
2007
141views more  BMCBI 2007»
15 years 4 months ago
HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
Erik Larsson, Per Lindahl, Petter Mostad
JAIR
2008
103views more  JAIR 2008»
15 years 3 months ago
SATzilla: Portfolio-based Algorithm Selection for SAT
It has been widely observed that there is no single "dominant" SAT solver; instead, different solvers perform best on different instances. Rather than following the trad...
Lin Xu, Frank Hutter, Holger H. Hoos, Kevin Leyton...
QRE
2008
140views more  QRE 2008»
15 years 3 months ago
Discrete mixtures of kernels for Kriging-based optimization
: Kriging-based exploration strategies often rely on a single Ordinary Kriging model which parametric covariance kernel is selected a priori or on the basis of an initial data set....
David Ginsbourger, Céline Helbert, Laurent ...
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