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BMCBI
2007
134views more  BMCBI 2007»
13 years 10 months ago
PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results
Background: BLAST searches are widely used for sequence alignment. The search results are commonly adopted for various functional and comparative genomics tasks such as annotating...
Ji He, Xinbin Dai, Xuechun Zhao
WWW
2003
ACM
14 years 11 months ago
Implementing XML Schema inside a relational database
XML Schema has emerged as a promising data model that unites structured and unstructured content. The Oracle database has led the commercial database community in integrating supp...
Sandeepan Banerjee
SIGMOD
2006
ACM
149views Database» more  SIGMOD 2006»
14 years 10 months ago
Efficient query processing on unstructured tetrahedral meshes
Modern scientific applications consume massive volumes of data produced by computer simulations. Such applications require new data management capabilities in order to scale to te...
Stratos Papadomanolakis, Anastassia Ailamaki, Juli...
SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
13 years 1 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
CIKM
2005
Springer
14 years 3 months ago
Incremental evaluation of a monotone XPath fragment
This paper shows a scheme for incremental evaluation of XPath queries. Here, we focus on a monotone fragment of XPath, i.e., when a data is deleted from (or inserted to) the datab...
Hidetaka Matsumura, Keishi Tajima