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CPHYSICS
2008
121views more  CPHYSICS 2008»
13 years 7 months ago
A scalable parallel algorithm for large-scale reactive force-field molecular dynamics simulations
A scalable parallel algorithm has been designed to perform multimillion-atom molecular dynamics (MD) simulations, in which first principlesbased reactive force fields (ReaxFF) des...
Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, ...
IMC
2006
ACM
14 years 1 months ago
Towards IP geolocation using delay and topology measurements
We present Topology-based Geolocation (TBG), a novel approach to estimating the geographic location of arbitrary Internet hosts. We motivate our work by showing that 1) existing a...
Ethan Katz-Bassett, John P. John, Arvind Krishnamu...
BMCBI
2010
150views more  BMCBI 2010»
13 years 7 months ago
Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
Background: Sequence alignments form part of many investigations in molecular biology, including the determination of phylogenetic relationships, the prediction of protein structu...
Pierre M. Durand, Scott Hazelhurst, Theresa L. Coe...
LPNMR
2009
Springer
14 years 2 months ago
Application of ASP for Automatic Synthesis of Flexible Multiprocessor Systems from Parallel Programs
Configurable on chip multiprocessor systems combine advantages of task-level parallelism and the flexibility of field-programmable devices to customize architectures for paralle...
Harold Ishebabi, Philipp Mahr, Christophe Bobda, M...
BMCBI
2007
99views more  BMCBI 2007»
13 years 7 months ago
Statistical significance of cis-regulatory modules
Background: It is becoming increasingly important for researchers to be able to scan through large genomic regions for transcription factor binding sites or clusters of binding si...
Dustin E. Schones, Andrew D. Smith, Michael Q. Zha...