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RECOMB
2001
Springer
16 years 6 months ago
Finding motifs using random projections
motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...
Jeremy Buhler, Martin Tompa
ICCAD
2004
IEEE
114views Hardware» more  ICCAD 2004»
16 years 2 months ago
High-level synthesis using computation-unit integrated memories
Abstract— High-level synthesis (HLS) of memory-intensive applications has featured several innovations in terms of enhancements made to the basic memory organization and data lay...
Chao Huang, Srivaths Ravi, Anand Raghunathan, Nira...
TACAS
2010
Springer
241views Algorithms» more  TACAS 2010»
16 years 27 days ago
Arrival Curves for Real-Time Calculus: The Causality Problem and Its Solutions
Abstract. The Real-Time Calculus (RTC) [16] is a framework to analyze heterogeneous real-time systems that process event streams of data. The streams are characterized by pairs of ...
Matthieu Moy, Karine Altisen
RECOMB
2010
Springer
16 years 24 days ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
PAM
2010
Springer
16 years 22 days ago
Toward Topology Dualism: Improving the Accuracy of AS Annotations for Routers
Abstract. To describe, analyze, and model the topological and structural characteristics of the Internet, researchers use Internet maps constructed at the router or autonomous syst...
Bradley Huffaker, Amogh Dhamdhere, Marina Fomenkov...
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