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» Data dependence analysis for array references
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BMCBI
2010
121views more  BMCBI 2010»
13 years 2 months ago
G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration
Background: The brightness of the probe spots on expression microarrays intends to measure the abundance of specific mRNA targets. Probes with runs of at least three guanines (G) ...
Mario Fasold, Peter F. Stadler, Hans Binder
FCCM
2000
IEEE
144views VLSI» more  FCCM 2000»
13 years 11 months ago
Automatic Synthesis of Data Storage and Control Structures for FPGA-Based Computing Engines
Mapping computations written in high-level programming languages to FPGA-based computing engines requires programmers to generate the datapath responsible for the core of the comp...
Pedro C. Diniz, Joonseok Park
FPGA
2001
ACM
123views FPGA» more  FPGA 2001»
13 years 12 months ago
Matching and searching analysis for parallel hardware implementation on FPGAs
Matching and searching computations play an important role in the indexing of data. These computations are typically encoded in very tight loops with a single index variable and a...
Pablo Moisset, Pedro C. Diniz, Joonseok Park
BMCBI
2011
12 years 11 months ago
Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
Background: Copy number aberrations (CNAs) are an important molecular signature in cancer initiation, development, and progression. However, these aberrations span a wide range of...
Youngmi Hur, Hyunju Lee
BMCBI
2007
200views more  BMCBI 2007»
13 years 7 months ago
Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
Background: Genomic deletions and duplications are important in the pathogenesis of diseases, such as cancer and mental retardation, and have recently been shown to occur frequent...
Ágnes Baross, Allen D. Delaney, H. Irene Li...