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» Defining functional distances over Gene Ontology
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BMCBI
2005
77views more  BMCBI 2005»
13 years 9 months ago
Ontological visualization of protein-protein interactions
Background: Cellular processes require the interaction of many proteins across several cellular compartments. Determining the collective network of such interactions is an importa...
Harold J. Drabkin, Christopher Hollenbeck, David P...
JUCS
2008
122views more  JUCS 2008»
13 years 9 months ago
On the Subrecursive Computability of Several Famous Constants
: For any class F of total functions in the set N of the natural numbers, we define the notion of F-computable real number. A real number is called Fcomputable if there exist one-...
Dimiter Skordev
BMCBI
2011
13 years 4 months ago
Logical Development of the Cell Ontology
Background: The Cell Ontology (CL) is an ontology for the representation of in vivo cell types. As biological ontologies such as the CL grow in complexity, they become increasingl...
Terrence F. Meehan, Anna Maria Masci, Amina Abdull...
BIBM
2008
IEEE
175views Bioinformatics» more  BIBM 2008»
14 years 4 months ago
Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources
We propose a novel approach for predicting protein functions of an organism by coupling sequence homology and PPI data between two (or more) species with multifunctional Gene Onto...
Antonina Mitrofanova, Vladimir Pavlovic, Bud Mishr...
BMCBI
2007
207views more  BMCBI 2007»
13 years 9 months ago
Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering
Background: Many important high throughput projects use in situ hybridization and may require the analysis of images of spatial cross sections of organisms taken with cellular lev...
Manjunatha Jagalur, Chris Pal, Erik G. Learned-Mil...