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» Defining functional distances over Gene Ontology
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BMCBI
2006
169views more  BMCBI 2006»
13 years 11 months ago
Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
Background: The accomplishment of the various genome sequencing projects resulted in accumulation of massive amount of gene sequence information. This calls for a large-scale comp...
Zhengdeng Lei, Yang Dai
NAR
2010
107views more  NAR 2010»
13 years 5 months ago
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
FlyTF (http://www.flytf.org) is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly Drosophila melano...
Ulrike Pfreundt, Daniel P. James, Susan Tweedie, D...
ICDE
2007
IEEE
121views Database» more  ICDE 2007»
14 years 2 months ago
Evaluating Different Ranking Functions for Context-Based Literature Search
Context-based literature digital library search is a new search paradigm that creates an effective ranking of query outputs by controlling query output topic diversity. We define ...
Nattakarn Ratprasartporn, Sulieman Bani-Ahmad, Ali...
BMCBI
2007
99views more  BMCBI 2007»
13 years 11 months ago
Towards validating the hypothesis of phylogenetic profiling
Background: As the number of fully sequenced genome increases, the need is greater for bioinformatics to predict or annotate genes of a newly sequenced genome. Ever since Eisenber...
Raja Loganantharaj, Mazen Atwi
BMCBI
2006
163views more  BMCBI 2006»
13 years 11 months ago
Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological featur
Background: Ensemble attribute profile clustering is a novel, text-based strategy for analyzing a userdefined list of genes and/or proteins. The strategy exploits annotation data ...
J. R. Semeiks, A. Rizki, Mina J. Bissell, I. Saira...