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RECOMB
2004
Springer
14 years 10 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
SAC
2010
ACM
14 years 5 months ago
Background knowledge in formal concept analysis: constraints via closure operators
The aim of this short paper is to present a general method of using background knowledge to impose constraints in conceptual clustering of object-attribute relational data. The pr...
Radim Belohlávek, Vilém Vychodil
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 4 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
CIKM
2010
Springer
13 years 8 months ago
Preserving location and absence privacy in geo-social networks
Online social networks often involve very large numbers of users who share very large volumes of content. This content is increasingly being tagged with geo-spatial and temporal c...
Dario Freni, Carmen Ruiz Vicente, Sergio Mascetti,...
TIT
2010
138views Education» more  TIT 2010»
13 years 4 months ago
Functional compression through graph coloring
Motivated by applications to sensor networks and privacy preserving databases, we consider the problem of functional compression. The objective is to separately compress possibly c...
Vishal Doshi, Devavrat Shah, Muriel Médard,...