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IPPS
2010
IEEE
13 years 5 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
IPPS
2006
IEEE
14 years 1 months ago
Parallel FPGA-based all-pairs shortest-paths in a directed graph
With rapid advances in VLSI technology, Field Programmable Gate Arrays (FPGAs) are receiving the attention of the Parallel and High Performance Computing community. In this paper,...
Uday Bondhugula, Ananth Devulapalli, Joseph Fernan...
ICCSA
2003
Springer
14 years 28 days ago
Coarse-Grained Parallel Matrix-Free Solution of a Three-Dimensional Elliptic Prototype Problem
The finite difference discretization of the Poisson equation in three dimensions results in a large, sparse, and highly structured system of linear equations. This prototype prob...
Kevin P. Allen, Matthias K. Gobbert
CCGRID
2005
IEEE
14 years 1 months ago
User group-based workload analysis and modelling
Knowledge about the workload is an important aspect for scheduling of resources as parallel computers or Grid components. As the scheduling quality highly depends on the character...
Baiyi Song, Carsten Ernemann, Ramin Yahyapour
CLUSTER
2008
IEEE
14 years 2 months ago
Divisible load scheduling with improved asymptotic optimality
—Divisible load model allows scheduling algorithms that give nearly optimal makespan with practical computational complexity. Beaumont et al. have shown that their algorithm prod...
Reiji Suda