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BMCBI
2004
208views more  BMCBI 2004»
13 years 8 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
DATE
1999
IEEE
172views Hardware» more  DATE 1999»
14 years 1 months ago
An Object-Based Executable Model for Simulation of Real-Time Hw/Sw Systems
This paper describes a simulation technique for RealTime Hw/Sw systems based on an object executable model. It allows designers to seamlessly estimate and verify their solutions f...
Olivier Pasquier, Jean Paul Calvez
TIP
2008
107views more  TIP 2008»
13 years 8 months ago
Sampling-Based Correlation Estimation for Distributed Source Coding Under Rate and Complexity Constraints
In many practical distributed source coding (DSC) applications, correlation information has to be estimated at the encoder in order to determine the encoding rate. Coding efficien...
Ngai-Man Cheung, Huisheng Wang, Antonio Ortega
PPOPP
2012
ACM
12 years 4 months ago
Deterministic parallel random-number generation for dynamic-multithreading platforms
Existing concurrency platforms for dynamic multithreading do not provide repeatable parallel random-number generators. This paper proposes that a mechanism called pedigrees be bui...
Charles E. Leiserson, Tao B. Schardl, Jim Sukha
SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
14 years 1 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...