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» Detecting Gene Relations from MEDLINE Abstracts
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BMCBI
2010
97views more  BMCBI 2010»
13 years 8 months ago
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach
Background: For heterogeneous tissues, such as blood, measurements of gene expression are confounded by relative proportions of cell types involved. Conclusions have to rely on es...
Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard ...
RECOMB
2012
Springer
11 years 10 months ago
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis
Abstract. Lateral gene transfer (LGT) is a common mechanism of nonvertical evolution where genetic material is transferred between two more or less distantly related organisms. It ...
Sebastien Roch, Sagi Snir
SIGKDD
2002
113views more  SIGKDD 2002»
13 years 7 months ago
Combining Data and Text Mining Techniques for Yeast Gene Regulation Prediction: A Case Study
In order to solve task 2 of the KDD Cup 2002, we exploited various available information sources. In particular, use of relational information describing the interactions among ge...
Mark-A. Krogel, Marcus Denecke, Marco Landwehr, To...
COOPIS
2004
IEEE
13 years 11 months ago
Automatic Initiation of an Ontology
We report on an a set of experiments carried out in the context of the Flemish OntoBasis project. Our purpose is to extract semantic relations from text corpora in an unsupervised ...
Marie-Laure Reinberger, Peter Spyns, A. Johannes P...
NAR
2011
225views Computer Vision» more  NAR 2011»
12 years 10 months ago
IsoBase: a database of functionally related proteins across PPI networks
We describe IsoBase, a database identifying functionally related proteins, across five major eukaryotic model organisms: Saccharomyces cerevisiae, Drosophila melanogaster, Caenorh...
Daniel Park, Rohit Singh, Michael Baym, Chung-Shou...