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BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...
BMCBI
2007
154views more  BMCBI 2007»
13 years 7 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
IPPS
2008
IEEE
14 years 1 months ago
High-speed string searching against large dictionaries on the Cell/B.E. Processor
Our digital universe is growing, creating exploding amounts of data which need to be searched, protected and filtered. String searching is at the core of the tools we use to curb...
Daniele Paolo Scarpazza, Oreste Villa, Fabrizio Pe...
CONTEXT
2003
Springer
14 years 22 days ago
A SAT-Based Algorithm for Context Matching
The development of more and more complex distributed applications over large networks of computers has raised the problem of semantic interoperability across applications based on ...
Paolo Bouquet, Bernardo Magnini, Luciano Serafini,...