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ENTCS
2002
134views more  ENTCS 2002»
13 years 10 months ago
Implementing Compositional Analysis Using Intersection Types With Expansion Variables
A program analysis is compositional when the analysis result for a particular program fragment is obtained solely from the results for its immediate subfragments via some composit...
Assaf J. Kfoury, Geoffrey Washburn, Joe Wells
BMCBI
2010
148views more  BMCBI 2010»
13 years 11 months ago
Analysis of interactions between ribosomal proteins and RNA structural motifs
Background: One important goal of structural bioinformatics is to recognize and predict the interactions between protein binding sites and RNA. Recently, a comprehensive analysis ...
Giovanni Ciriello, Claudio Gallina, Concettina Gue...
BMCBI
2008
127views more  BMCBI 2008»
13 years 11 months ago
Gene and pathway identification with Lp penalized Bayesian logistic regression
Background: Identifying genes and pathways associated with diseases such as cancer has been a subject of considerable research in recent years in the area of bioinformatics and co...
Zhenqiu Liu, Ronald B. Gartenhaus, Ming Tan, Feng ...
BMCBI
2007
156views more  BMCBI 2007»
13 years 11 months ago
Large-scale clustering of CAGE tag expression data
Background: Recent analyses have suggested that many genes possess multiple transcription start sites (TSSs) that are differentially utilized in different tissues and cell lines. ...
Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, ...
BMCBI
2011
13 years 6 months ago
The dChip survival analysis module for microarray data
Background: Genome-wide expression signatures are emerging as potential marker for overall survival and disease recurrence risk as evidenced by recent commercialization of gene ex...
Samir B. Amin, Parantu K. Shah, Aimin Yan, Sophia ...