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    BMCBI
    2008
    202views more  BMCBI 2008»
    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    13 years 6 months ago
    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    Download  www.biomedcentral.com
    Background: Integrating data from multiple global assays and curated databases is essential to understand the spatiotemporal interactions within cells. Different experiments measu...
    Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
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    BIOSYSTEMS
    2008
    75views more  BIOSYSTEMS 2008»
    Using matrix of thresholding partial correlation coefficients to infer regulatory network
    13 years 6 months ago
    Using matrix of thresholding partial correlation coefficients to infer regulatory network
    Download  www.cab.zju.edu.cn
    DNA arrays measure the expression levels for thousands of genes simultaneously under different conditions. These measurements reflect many aspects of the underlying biological pro...
    Lide Han, Jun Zhu
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    RECOMB
    2004
    Springer
    160views Computational Biology» more  RECOMB 2004»
    Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
    14 years 7 months ago
    Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
    Download  phys.columbia.edu
    We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
    Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
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    BMCBI
    2006
    170views more  BMCBI 2006»
    Biclustering of gene expression data by non-smooth non-negative matrix factorization
    13 years 6 months ago
    Biclustering of gene expression data by non-smooth non-negative matrix factorization
    Download  www.biomedcentral.com
    Background: The extended use of microarray technologies has enabled the generation and accumulation of gene expression datasets that contain expression levels of thousands of gene...
    Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Fra...
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    BMCBI
    2007
    174views more  BMCBI 2007»
    Inferring activity changes of transcription factors by binding association with sorted expression profiles
    13 years 6 months ago
    Inferring activity changes of transcription factors by binding association with sorted expression profiles
    Download  www.biomedcentral.com
    Background: The identification of transcription factors (TFs) associated with a biological process is fundamental to understanding its regulatory mechanisms. From microarray data,...
    Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M. Li
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