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» Efficient Seeding Techniques for Protein Similarity Search
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BMCBI
2004
138views more  BMCBI 2004»
13 years 9 months ago
Constraint Logic Programming approach to protein structure prediction
Background: The protein structure prediction problem is one of the most challenging problems in biological sciences. Many approaches have been proposed using database information ...
Alessandro Dal Palù, Agostino Dovier, Feder...
BMCBI
2002
133views more  BMCBI 2002»
13 years 9 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
ICDE
2002
IEEE
209views Database» more  ICDE 2002»
14 years 10 months ago
Geometric-Similarity Retrieval in Large Image Bases
We propose a novel approach to shape-based image retrieval that builds upon a similarity criterion which is based on the average point set distance. Compared to traditional techni...
Ioannis Fudos, Leonidas Palios, Evaggelia Pitoura
SIGMOD
2009
ACM
155views Database» more  SIGMOD 2009»
14 years 9 months ago
Efficient top-k algorithms for fuzzy search in string collections
An approximate search query on a collection of strings finds those strings in the collection that are similar to a given query string, where similarity is defined using a given si...
Rares Vernica, Chen Li
RECOMB
2007
Springer
14 years 9 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...