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CIBCB
2009
IEEE
13 years 8 months ago
rnaDesign: Local search for RNA secondary structure design
Abstract-- The RNA secondary structure design (SSD) problem is a recently emerging research topic motivated by applications such as customized drug design and the self-assembly of ...
Denny C. Dai, Herbert H. Tsang, Kay C. Wiese
IPPS
2007
IEEE
14 years 1 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
GOAL: A software tool for assessing biological significance of genes groups
Background: Modern high throughput experimental techniques such as DNA microarrays often result in large lists of genes. Computational biology tools such as clustering are then us...
Alain B. Tchagang, Alexander Gawronski, Hugo B&eac...
RECOMB
2012
Springer
11 years 10 months ago
Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem
Signaling networks are essential for cells to control processes such as growth and response to stimuli. Although many “omic” data sources are available to probe signaling pathw...
Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani...
NOCS
2007
IEEE
14 years 1 months ago
On Characterizing Performance of the Cell Broadband Engine Element Interconnect Bus
Abstract – With the rise of multicore computing, the design of onchip networks (or networks on chip) has become an increasingly important component of computer architecture. The ...
Thomas William Ainsworth, Timothy Mark Pinkston