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» Evaluation of clustering algorithms for gene expression data
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COCOON
2005
Springer
15 years 11 months ago
Algorithmic and Complexity Issues of Three Clustering Methods in Microarray Data Analysis
The complexity, approximation and algorithmic issues of several clustering problems are studied. These non-traditional clustering problems arise from recent studies in microarray ...
Jinsong Tan, Kok Seng Chua, Louxin Zhang
ADMA
2006
Springer
131views Data Mining» more  ADMA 2006»
16 years 7 days ago
Distance Guided Classification with Gene Expression Programming
Gene Expression Programming (GEP) aims at discovering essential rules hidden in observed data and expressing them mathematically. GEP has been proved to be a powerful tool for cons...
Lei Duan, Changjie Tang, Tianqing Zhang, Dagang We...
BMCBI
2007
136views more  BMCBI 2007»
15 years 6 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
BIOINFORMATICS
2007
66views more  BIOINFORMATICS 2007»
15 years 6 months ago
Gene expression network analysis and applications to immunology
We address the problem of using expression data and prior biological knowledge to identify differentially expressed pathways or groups of genes. Following an idea of Ideker et al...
Serban Nacu, Rebecca Critchley-Thorne, Peter Lee, ...
CGF
2008
142views more  CGF 2008»
15 years 6 months ago
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context
DNA microarrays are used to measure the expression levels of thousands of genes simultaneously. In a time series experiment, the gene expressions are measured as a function of tim...
Michel A. Westenberg, Sacha A. F. T. van Hijum, Os...