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ICA3PP
2005
Springer
15 years 9 months ago
GridMD: Program Architecture for Distributed Molecular Simulation
In the present work we describe architectural concepts of the distributed molecular simulation package GridMD. The main purpose of this work is to underline the construction patter...
Ilya Valuev
APBC
2004
122views Bioinformatics» more  APBC 2004»
15 years 5 months ago
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...
ISCI
2007
84views more  ISCI 2007»
15 years 3 months ago
Simulating continuous fuzzy systems
: In our book to appear in print from Springer-Verlag GmbH, Simulating Continuous Fuzzy Systems, Buckley and Jowers, we use crisp continuous simulation under Matlab™/Simulink™ ...
Leonard J. Jowers, James J. Buckley, Kevin D. Reil...
DAC
2001
ACM
16 years 4 months ago
Formal Property Verification by Abstraction Refinement with Formal, Simulation and Hybrid Engines
roperty Verification by Abstraction Refinement with Formal, Simulation and Hybrid Engines Dong Wang , Pei-Hsin Ho , Jiang Long , James Kukula Yunshan Zhu , Tony Ma , Robert D...
Dong Wang, Pei-Hsin Ho, Jiang Long, James H. Kukul...
127
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BMCBI
2010
120views more  BMCBI 2010»
15 years 3 months ago
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Background: Metagenomics is the study of environmental samples using sequencing. Rapid advances in sequencing technology are fueling a vast increase in the number and scope of met...
Suparna Mitra, Max Schubach, Daniel H. Huson