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ALMOB
2008
95views more  ALMOB 2008»
13 years 7 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
BMCBI
2010
100views more  BMCBI 2010»
13 years 7 months ago
Scaffold filling, contig fusion and comparative gene order inference
Background: There has been a trend in increasing the phylogenetic scope of genome sequencing without finishing the sequence of the genome. Increasing numbers of genomes are being ...
Adriana Muñoz, Chunfang Zheng, Qian Zhu, Vi...
BMCBI
2007
136views more  BMCBI 2007»
13 years 7 months ago
Reduced modeling of signal transduction - a modular approach
Background: Combinatorial complexity is a challenging problem in detailed and mechanistic mathematical modeling of signal transduction. This subject has been discussed intensively...
Markus Koschorreck, Holger Conzelmann, Sybille Ebe...
BMCBI
2007
88views more  BMCBI 2007»
13 years 7 months ago
Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and
Background: DNA melting curve analysis using double-stranded DNA-specific dyes such as SYTO9 produce complex and reproducible melting profiles, resulting in the detection of multi...
John P. Rasmussen, Christopher P. Saint, Paul T. M...
CORR
2010
Springer
182views Education» more  CORR 2010»
13 years 7 months ago
Index coding via linear programming
Abstract Anna Blasiak Robert Kleinberg Eyal Lubetzky Index Coding has received considerable attention recently motivated in part by applications such as fast video-on-demand and e...
Anna Blasiak, Robert D. Kleinberg, Eyal Lubetzky