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ISMB
2000
13 years 9 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
27
Voted
BMCBI
2010
125views more  BMCBI 2010»
13 years 2 months ago
ProbFAST: Probabilistic Functional Analysis System Tool
Background: The post-genomic era has brought new challenges regarding the understanding of the organization and function of the human genome. Many of these challenges are centered...
Israel T. da Silva, Ricardo Z. N. Vêncio, Th...
SIGMOD
2010
ACM
249views Database» more  SIGMOD 2010»
14 years 14 days ago
Active knowledge: dynamically enriching RDF knowledge bases by web services
The proliferation of knowledge-sharing communities and the advances in information extraction have enabled the construction of large knowledge bases using the RDF data model to re...
Nicoleta Preda, Gjergji Kasneci, Fabian M. Suchane...
ASWC
2008
Springer
13 years 9 months ago
Semantic Assistants - User-Centric Natural Language Processing Services for Desktop Clients
Today's knowledge workers have to spend a large amount of time and manual effort on creating, analyzing, and modifying textual content. While more advanced semantically-orient...
René Witte, Thomas Gitzinger
BMCBI
2007
131views more  BMCBI 2007»
13 years 7 months ago
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Background: Genome-wide expression, sequence and association studies typically yield large sets of gene candidates, which must then be further analysed and interpreted. Informatio...
Kay Prüfer, Bjoern Muetzel, Hong Hai Do, Gunt...