54 search results - page 7 / 11 » Extending the Hardness of RNA Secondary Structure Comparison |
BMCBI
2007
13 years 7 months ago
2007
Background: The secondary structure of an RNA must be known before the relationship between its structure and function can be determined. One way to predict the secondary structur...
IPPS
2009
IEEE
14 years 2 months ago
2009
IEEE
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
BMCBI
2008
13 years 7 months ago
2008
Background: RNAmute is an interactive Java application which, given an RNA sequence, calculates the secondary structure of all single point mutations and organizes them into categ...
ICASSP
2011
IEEE
12 years 11 months ago
2011
IEEE
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
IJBRA
2006
13 years 7 months ago
2006
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...