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» Extending the Hardness of RNA Secondary Structure Comparison
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BMCBI
2011
12 years 11 months ago
RAG: An Update to the RNA-As-Graphs Resource
Background: In 2004, we presented a web resource for stimulating the search for novel RNAs, RNA-As-Graphs (RAG), which classified, catalogued, and predicted RNA secondary structur...
Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tam...
CORR
2006
Springer
159views Education» more  CORR 2006»
13 years 7 months ago
Structural Alignments of pseudo-knotted RNA-molecules in polynomial time
An RNA molecule is structured on several layers. The primary and most obvious structure is its sequence of bases, i.e. a word over the alphabet {A, C, G, U}. The higher structure i...
Michael Brinkmeier
BMCBI
2006
142views more  BMCBI 2006»
13 years 7 months ago
RDMAS: a web server for RNA deleterious mutation analysis
Background: The diverse functions of ncRNAs critically depend on their structures. Mutations in ncRNAs disrupting the structures of functional sites are expected to be deleterious...
Wenjie Shu, Xiaochen Bo, Rujia Liu, Dongsheng Zhao...
LATA
2010
Springer
14 years 2 months ago
Extending Stochastic Context-Free Grammars for an Application in Bioinformatics
We extend stochastic context-free grammars such that the probability of applying a production can depend on the length of the subword that is generated from the application and sho...
Frank Weinberg, Markus E. Nebel
BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
Improving model predictions for RNA interference activities that use support vector machine regression by combining and filterin
Background: RNA interference (RNAi) is a naturally occurring phenomenon that results in the suppression of a target RNA sequence utilizing a variety of possible methods and pathwa...
Andrew S. Peek