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SC
2005
ACM
14 years 1 months ago
SPICE: Simulated Pore Interactive Computing Environment
— SPICE aims to understand the vital process of translocation of biomolecules across protein pores by computing the free energy profile of the translocating biomolecule along th...
Shantenu Jha, Peter V. Coveney, Matt J. Harvey
IPPS
2007
IEEE
14 years 2 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
CPHYSICS
2010
88views more  CPHYSICS 2010»
13 years 8 months ago
Distributed computing as a virtual supercomputer: Tools to run and manage large-scale BOINC simulations
Distributed computing (DC) projects tackle large computational problems by exploiting the donated processing power of thousands of volunteered computers, connected through the Int...
Toni Giorgino, Matt J. Harvey, Gianni De Fabritiis
BMCBI
2007
202views more  BMCBI 2007»
13 years 8 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
RSS
2007
126views Robotics» more  RSS 2007»
13 years 9 months ago
Automatic Scheduling for Parallel Forward Dynamics Computation of Open Kinematic Chains
— Recent progress in the algorithm as well as the processor power have made the dynamics simulation of complex kinematic chains more realistic in various fields such as human mo...
Katsu Yamane, Yoshihiko Nakamura