112 search results - page 5 / 23 » FPGA-Based Multigrid Computation for Molecular Dynamics Simu... |
FCCM
2004
IEEE
13 years 11 months ago
2004
IEEE
Current high-performance applications are typically implemented on large-scale general-purpose distributed or multiprocessing systems often based on commodity microprocessors. Fie...
FPL
2005
Springer
14 years 1 months ago
2005
Springer
Molecular Dynamics (MD) is of central importance to computational chemistry. Here we show that MD can be implemented efficiently on a COTS FPGA board, and that speedups from ¿½...
RECOMB
2009
Springer
14 years 8 months ago
2009
Springer
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
DAGSTUHL
2010
13 years 9 months ago
2010
We present a novel method to measure saliency in molecular dynamics simulation data. This saliency measure is based on a multiscale center-surround mechanism, which is fast and ef...
JCC
2011
13 years 2 months ago
2011
Abstract: With today’s available computer power, free energy calculations from equilibrium molecular dynamics simulations “via counting” become feasible for an increasing num...